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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73026613_73027527_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73026613 - 73027527
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GATCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCCCTTTGATC
Flanking Amino Acid:
VSTVAEVRSLSINTLVKISK
Intron Amino Acid Position:
1276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.8
0.72
0.9
73.1
41.8
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
65.9
0.48
1.2
70.6
35.2

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023146
72992891 - 73036969
44079
ENSAPLT00000006785
72978981 - 73036969
57989
ENSAPLT00000029515
72992891 - 73036416
43526