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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73030362_73030476_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73030362 - 73030476
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTCTGTTACA
Flanking Amino Acid:
FAFAMGHLVRTSRDSSTEKL
Intron Amino Acid Position:
1432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.7
0.78
0.8
79.3
32.7
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
50.5
0.01
2.3
70.65
41.9

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029515
72992891 - 73036416
43526
ENSAPLT00000023146
72992891 - 73036969
44079
ENSAPLT00000006785
72978981 - 73036969
57989