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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73032415_73033008_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73032415 - 73033008
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TTACTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TCTGTCTTACTC
Flanking Amino Acid:
GLPGRTWTGKEELLKAIASV
Intron Amino Acid Position:
1588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
79
0.65
0.9
73.2
37
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
55.4
0.15
1.7
64.76
42

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006785
72978981 - 73036969
57989
ENSAPLT00000029515
72992891 - 73036416
43526
ENSAPLT00000023146
72992891 - 73036969
44079