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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73034316_73034691_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73034316 - 73034691
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TTGCTTTCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
GGTAACACAATC
Flanking Amino Acid:
KAWPRSPETQRCYRQEFCKL
Intron Amino Acid Position:
1715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.4
68.8
43.8
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
76.8
0.6
0.8
73.4
31.5
Minor 5ss
36.8
-1.5
3
45.7
42.5
Minor BPS
42.6
-0.5
1.9
51.75
38.4

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029515
72992891 - 73036416
43526
ENSAPLT00000023146
72992891 - 73036969
44079
ENSAPLT00000006785
72978981 - 73036969
57989