About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73034798_73034973_F


Intron Information:

Intron Rank:
46

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
73034798 - 73034973

Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTAATTCCC

5'SS Class:
major

3'SS Sequence:
TTGCATTTGACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTGCAT

U12 Branch Point Sequence:
TTGCATTTGACA

Flanking Amino Acid:
VLQAMNAYFQGLVLFEEEHS

Intron Amino Acid Position:
1750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.9
0.56
1.1
62.6
42.2

Major BPS
75
0.62
1.4
85.7
34.9

Major PPT
72.3
0.5
1.1
68.3
41.9

Minor 5ss
35.1
-1.7
2.8
38
39.4

Minor BPS
58.4
0.26
1.5
68.69
37.5

Associated Gene:

Gene:
ECPAS

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

72992891 - 73036969
44079

72978981 - 73036969
57989

72992891 - 73036416
43526