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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73066062_73066243_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73066062 - 73066243
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATGTTTTATTT
Flanking Amino Acid:
TKVLNMKPPEILSMVEEAAG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
49.5
0.05
1.6
64.73
40.6

Associated Gene:

Gene:
SMC2
Ensembl Gene ID:
ENSAPLG00000007236
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019046
73045836 - 73070614
24779