About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73076886_73076970_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
73076886 - 73076970

Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTTAGACAT

5'SS Class:
major

3'SS Sequence:
GAGATGCTTCCAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATTGCAC

U12 Branch Point Sequence:
GCACCCACACAG

Flanking Amino Acid:
SNFFQVGLGRVTNRVHLITM

Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.8
0.68
1.1
72.8
38.2

Major BPS
56.3
0.16
1.4
69.1
37.9

Major PPT
62.9
0.29
1.1
50.9
47.6

Minor 5ss
30
-2.3
3
39.6
45.8

Minor BPS
35.6
-1.2
1.9
33.49
39.1

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

73074763 - 73077632
2870