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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73095447_73096841_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73095447 - 73096841
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
GCTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCTTTACAG
Flanking Amino Acid:
TFQFYKNGKMVQEFSGANKE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
53.3
46.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.8
0.81
0.8
79.7
32.4
Minor 5ss
42
-0.9
3.2
52.2
46.9
Minor BPS
56.7
0.07
1.8
63.96
44.2

Associated Gene:

Gene:
TXN
Ensembl Gene ID:
ENSAPLG00000008771
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009116
73095384 - 73102399
7016