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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73097711_73098346_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73097711 - 73098346
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTCTTTCATT
Flanking Amino Acid:
PCKMIKPFFHSLCEKFGDVV
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.7
0.71
0.8
74.5
35
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
67.7
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
TXN
Ensembl Gene ID:
ENSAPLG00000008771
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009116
73095384 - 73102399
7016