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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73142972_73144695_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73142972 - 73144695
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTTTTGACT
Flanking Amino Acid:
GSTVSYTCKEGYTLDGPATI
Intron Amino Acid Position:
1998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.7
35.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.7
0.71
0.8
76.7
30.9
Minor 5ss
45
-0.5
2.5
51.2
45.5
Minor BPS
75.2
0.88
1.1
85.97
34.5

Associated Gene:

Gene:
SVEP1
Ensembl Gene ID:
ENSAPLG00000008787
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046750
73115905 - 73236806
120902
ENSAPLT00000009176
73115905 - 73236806
120902