About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73144864_73145808_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73144864 - 73145808
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GCAGTCTTAATA
Flanking Amino Acid:
SVSYTCDNGYSLQGPSVLVC
Intron Amino Acid Position:
1942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
80
0.75
1
78.6
31
Major PPT
78.6
0.64
0.9
76.2
37.8
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
59
0.28
1.4
60.01
40.5

Associated Gene:

Gene:
SVEP1
Ensembl Gene ID:
ENSAPLG00000008787
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009176
73115905 - 73236806
120902