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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73145889_73147181_R

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
73145889 - 73147181
Intron Length:
1293

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCTGATTGT
5'SS Class:
weak_major
3'SS Sequence:
TCCTAGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
CTCCTGTGAAAT
Flanking Amino Acid:
YCEGVVAGENNISNGKYTLN
Intron Amino Acid Position:
1857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.01
1.4
52.9
43.7
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
68.3
0.41
0.9
60.7
35
Minor 5ss
28.3
-2.5
4.1
45
43.5
Minor BPS
42.7
-0.4
2.1
58.8
44.2

Associated Gene:

Gene:
SVEP1
Ensembl Gene ID:
ENSAPLG00000008787
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046750
73115905 - 73236806
120902