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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73146001_73146331_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73146001 - 73146331
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTATTGATAACA
Flanking Amino Acid:
NFTYRSKVIYRCNDGYRLVG
Intron Amino Acid Position:
1878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
84.8
32.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.5
0.62
0.8
72.8
31
Minor 5ss
38.3
-1.3
3.3
57.7
46.5
Minor BPS
48.3
-0.1
2.3
65.7
40.3

Associated Gene:

Gene:
SVEP1
Ensembl Gene ID:
ENSAPLG00000008787
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009176
73115905 - 73236806
120902