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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73146417_73147201_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73146417 - 73147201
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAGTTG
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTGTATCAACC
Flanking Amino Acid:
QWSHPIPYCEAISCGGPVIP
Intron Amino Acid Position:
1850

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1
61.5
39.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
88.7
0.87
0.7
83.5
31.6
Minor 5ss
40.3
-1.1
3.3
54.5
49.7
Minor BPS
49.7
-0
1.9
65.93
39.5

Associated Gene:

Gene:
SVEP1
Ensembl Gene ID:
ENSAPLG00000008787
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009176
73115905 - 73236806
120902