About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73165105_73166309_R


Intron Information:

Intron Rank:
20

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
73165105 - 73166309

Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
CAG|GCAAGGACA

5'SS Class:
strong_major

3'SS Sequence:
TTGCTTGTGGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTACAT

U12 Branch Point Sequence:
TTTACTGTAATT

Flanking Amino Acid:
ISKQYKVSSQVFHECFLEPC

Intron Amino Acid Position:
1199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
94.7
1.06
0.8
83.5
27.7

Major BPS
70.2
0.5
1.1
77.2
36

Major PPT
71.8
0.49
1.1
68.8
41.9

Minor 5ss
22.2
-3.2
3.8
31.6
42.4

Minor BPS
62.1
0.46
2
84.21
37.1

Associated Gene:

Gene:
SVEP1

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

73115905 - 73236806
120902

73115905 - 73236806
120902