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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73167141_73167934_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73167141 - 73167934
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCACTCTGAAAA
Flanking Amino Acid:
RGAVDDSACGVPCPAGEFSR
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
79.2
29
Major BPS
69.8
0.49
1
61
37.5
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
36.7
-1.5
2.6
44.4
43.7
Minor BPS
50.8
0.02
1.5
59.84
39.3

Associated Gene:

Gene:
SVEP1
Ensembl Gene ID:
ENSAPLG00000008787
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046750
73115905 - 73236806
120902
ENSAPLT00000009176
73115905 - 73236806
120902