About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73168097_73168815_R


Intron Information:

Intron Rank:
17

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
73168097 - 73168815

Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGAGAACT

5'SS Class:
strong_major

3'SS Sequence:
TTCTACTTTACAG|C

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TCTTTAT

U12 Branch Point Sequence:
TCTTTATGAATT

Flanking Amino Acid:
LHSRSISECKAQCKQGTYSS

Intron Amino Acid Position:
1059

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.8
0.92
0.8
83.3
27.9

Major BPS
83.9
0.84
1
73.9
41.3

Major PPT
85.8
0.81
0.8
79.9
31.8

Minor 5ss
30.7
-2.2
2.9
41.1
44.9

Minor BPS
58.8
0.36
1.7
77.48
39.2

Associated Gene:

Gene:
SVEP1

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

73115905 - 73236806
120902

73115905 - 73236806
120902