About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73183016_73187670_R


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
73183016 - 73187670

Intron Length:
4655

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTAGGTATC

5'SS Class:
major

3'SS Sequence:
TGGTCTCTTGTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTTAAT

U12 Branch Point Sequence:
TATATCTTAATG

Flanking Amino Acid:
QWDSKEPKCVEMRCPAFQKP

Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79
0.68
1.1
76.2
39.9

Major BPS
87
0.92
0.9
86.2
29.1

Major PPT
75.4
0.57
0.9
70
36.5

Minor 5ss
38.5
-1.3
3.1
45.5
42.9

Minor BPS
69.5
0.47
1.3
68.99
38.5

Associated Gene:

Gene:
SVEP1

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

73115905 - 73236806
120902

73115905 - 73236806
120902