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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73192466_73215841_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73192466 - 73215841
Intron Length:
23376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTTTGCTCAACA
Flanking Amino Acid:
YGKGLQHECTACPPGTYKPE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
69.6
0.49
1
59.5
39
Major PPT
78.6
0.64
0.9
74.2
35.4
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
68.1
0.56
2
83.78
36.8

Associated Gene:

Gene:
SVEP1
Ensembl Gene ID:
ENSAPLG00000008787
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046750
73115905 - 73236806
120902
ENSAPLT00000009176
73115905 - 73236806
120902