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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73319815_73320016_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73319815 - 73320016
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTCTTTTTACA
Flanking Amino Acid:
PSACTRIPFFDFKKENITRT
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
62.5
42.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88.7
0.87
0.7
83.5
31.6
Minor 5ss
30
-2.3
3.3
35.2
43.3
Minor BPS
57.6
0.23
1.6
68.96
36.8

Associated Gene:

Gene:
MUSK
Ensembl Gene ID:
ENSAPLG00000009215
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009653
73284924 - 73332978
48055