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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73320041_73321881_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73320041 - 73321881
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTAACTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTTTAACT
Flanking Amino Acid:
FFDFKKENITRTCYSGNGQF
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.3
0.57
0.9
66.4
40.3
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
81.3
1.06
1
92.89
28.4

Associated Gene:

Gene:
MUSK
Ensembl Gene ID:
ENSAPLG00000009215
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009653
73284924 - 73332978
48055