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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73323888_73324226_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73323888 - 73324226
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTC
5'SS Class:
strong_major
3'SS Sequence:
TCCATTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGACCAACAACT
Flanking Amino Acid:
RRRKQWKNKKRESETPTLTT
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.8
0.65
0.9
76
37.8
Minor 5ss
35.9
-1.6
3.3
50.8
45.8
Minor BPS
45.5
-0.2
2
66.75
42.5

Associated Gene:

Gene:
MUSK
Ensembl Gene ID:
ENSAPLG00000009215
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009653
73284924 - 73332978
48055