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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73324419_73330035_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73324419 - 73330035
Intron Length:
5617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CACCTTTTACCT
Flanking Amino Acid:
EGAFGRVFQARAPGLLPYEP
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
74.2
0.6
1
67
39.4
Major PPT
81.8
0.71
0.7
80
25.4
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
49
0.01
1.6
61.25
43.1

Associated Gene:

Gene:
MUSK
Ensembl Gene ID:
ENSAPLG00000009215
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009653
73284924 - 73332978
48055