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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73403536_73415360_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73403536 - 73415360
Intron Length:
11825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TCTCTCTCCCCC
Flanking Amino Acid:
SMMSQPEVIESTAMSEPQCY
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.1
0.72
0.7
79.5
26
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
35
-1.1
3.5
55.1
43.3

Associated Gene:

Gene:
LPAR1
Ensembl Gene ID:
ENSAPLG00000010035
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010445
73370619 - 73415529
44911