Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7341414_7342365_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7341414 - 7342365

Intron Length:

952

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTGAGTAAT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

TTTTCTTTTTCT

Flanking Amino Acid:

AALAMEKRLEEDLRKTRDYL

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

76.8

33.7

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

33.2

-1.9

2.8

38.8

40.3

Minor BPS

48.1

-0

3.6

87.77

37.8

Associated Gene:

Gene:

HAUS1

Ensembl Gene ID:

ENSAPLG00000011232

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045673

7334981 - 7344835

9855

ENSAPLT00000011716

7334981 - 7345039

10059