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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7346461_7347464_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7346461 - 7347464
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTCA
5'SS Class:
major
3'SS Sequence:
TTACTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AATTACTTATTT
Flanking Amino Acid:
ARSLPRHAGLVSRNALGAAF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.4
35.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79.7
0.67
0.8
78.5
34.4
Minor 5ss
38.8
-1.3
2.9
44.7
44.3
Minor BPS
60.1
0.4
1.8
76.87
39.5

Associated Gene:

Gene:
ATP5F1A
Ensembl Gene ID:
ENSAPLG00000011512
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012014
7346387 - 7353858
7472