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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7348781_7349607_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7348781 - 7349607
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGATCTTTATCC
Flanking Amino Acid:
EMVEFSSGLKGMSLNLEPDN
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.8
0.53
0.8
66.7
38.7
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
65.4
0.46
1.6
72
39

Associated Gene:

Gene:
ATP5F1A
Ensembl Gene ID:
ENSAPLG00000011512
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012014
7346387 - 7353858
7472