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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73511509_73516643_R

Intron Information:

Intron Rank:
129814
Intron Class:
major
Intron Phase:
Intron Coordinates:
73511509 - 73516643
Intron Length:
5135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACACAAA
5'SS Class:
major
3'SS Sequence:
TCCCATCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATCTATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
67.6
39.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.6
0.49
0.8
65.7
29.9
Minor 5ss
37
-1.5
3.2
48.2
47.5
Minor BPS
67.4
0.62
1.4
78.91
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017038
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020729
73508344 - 73520332
11989