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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7352641_7352843_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7352641 - 7352843
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATG
Flanking Amino Acid:
LTELLKQGQYVPMAIEEQVA
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.3
0.7
0.8
77
30.6
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
59
0.14
1.8
68.31
39.9

Associated Gene:

Gene:
ATP5F1A
Ensembl Gene ID:
ENSAPLG00000011512
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012014
7346387 - 7353858
7472