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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7361146_7362242_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7361146 - 7362242
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAGC
5'SS Class:
major
3'SS Sequence:
CCTTCCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCTTCCCCAACA
Flanking Amino Acid:
CKEFEDFLKERAIIEEKYGK
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61.3
43.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.6
0.49
0.8
66.1
28.6
Minor 5ss
30.9
-2.2
3.4
43.1
44.1
Minor BPS
55
0.15
2
68.3
43.9

Associated Gene:

Gene:
PSTPIP2
Ensembl Gene ID:
ENSAPLG00000011930
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044079
7357106 - 7369425
12320