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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73612607_73616247_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73612607 - 73616247
Intron Length:
3641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGGCTCATAATT
Flanking Amino Acid:
PDEYNMLDCGGLEMAWVKRP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.7
81.4
36.1
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
55.2
0.24
1.6
70.85
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010110
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010540
73611553 - 73646339
34787