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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73621835_73623198_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73621835 - 73623198
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
CCTTTTCTAATC
Flanking Amino Acid:
EAKTTVLPAVVCGDGFCEEE
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.4
29.5
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
78.2
0.63
0.9
78.7
33.5
Minor 5ss
45.7
-0.5
2.9
64.3
47.2
Minor BPS
52.9
0.07
1.7
61.52
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010110
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010540
73611553 - 73646339
34787