About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73628551_73629442_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73628551 - 73629442
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
CATTCTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ACTCTCTGAACA
Flanking Amino Acid:
KKLYFTQTGRYDGRTVAIKK
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.7
29.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.9
0.67
0.9
76.7
37
Minor 5ss
41.4
-1
2.8
50.7
41.2
Minor BPS
61.5
0.36
1.4
67.94
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010110
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010540
73611553 - 73646339
34787