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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73636196_73637149_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73636196 - 73637149
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACTTTTTCAACT
Flanking Amino Acid:
EIATRSDPMPKDDVHSAEYS
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.5
0.75
0.7
77
31.8
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
64.7
0.54
1.5
77.81
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010110
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010540
73611553 - 73646339
34787