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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73638501_73639425_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73638501 - 73639425
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCATGTTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TATTTTGTACAT
Flanking Amino Acid:
VSPVDMMMTLMEKYSKHLEI
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
78.7
30.9
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
67.9
0.4
1
65.8
39.8
Minor 5ss
44
-0.7
2.8
55.4
44
Minor BPS
45.8
-0.2
2.2
69.32
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010110
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010540
73611553 - 73646339
34787