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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73639520_73640273_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73639520 - 73640273
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
CCTTCTATAACA
Flanking Amino Acid:
EKQKTDRLLYSMLPKQVADD
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
83.4
29
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
74.3
0.55
0.9
69.7
34
Minor 5ss
48
-0.2
2.8
68.9
36.6
Minor BPS
64.1
0.44
1.6
71.7
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010110
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010540
73611553 - 73646339
34787