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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73642520_73643450_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73642520 - 73643450
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAACA
Flanking Amino Acid:
LLKIRAGIHSGAVVAGVVGT
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.1
0.65
0.9
74.7
38.5
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
73.8
0.74
1.5
82.85
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010110
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010540
73611553 - 73646339
34787