Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7365720_7366069_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7365720 - 7366069

Intron Length:

350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGTG

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TGTTACCCAATT

Flanking Amino Acid:

AQTKSALEDSDRGYQQSITA

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

72.2

39.5

Major BPS

0.82

0.8

24.9

Major PPT

82.5

0.73

0.8

76.8

31.2

Minor 5ss

34.5

-1.8

3.4

45.9

49.3

Minor BPS

49.6

0.05

75.35

40.9

Associated Gene:

Gene:

PSTPIP2

Ensembl Gene ID:

ENSAPLG00000011930

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044079

7357106 - 7369425

12320

ENSAPLT00000012412

7357106 - 7369425

12320