About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7375923_7377373_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
7375923 - 7377373

Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGCTGTCA

5'SS Class:
major

3'SS Sequence:
GGTCGCTTTACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATAAAAT

U12 Branch Point Sequence:
CTGACATAAAAT

Flanking Amino Acid:
TFKEEQKTVQGVCADQCKVT

Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
65.8
0.37
1.1
58.4
36.8

Major BPS
61.8
0.29
1.1
67.7
34.6

Major PPT
73.1
0.52
1
64.6
41.4

Minor 5ss
30.6
-2.2
3.3
39.4
46

Minor BPS
45.7
-0.2
2
63.06
46.4

Associated Gene:

Gene:
EPG5

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7375605 - 7421765
46161