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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7379054_7379733_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7379054 - 7379733
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAATG
5'SS Class:
strong_major
3'SS Sequence:
CATTTCATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTACTTAGACT
Flanking Amino Acid:
IGEWAVPFIQIKVLDNPSGV
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
73.3
37.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.6
0.67
0.9
70.5
39.6
Minor 5ss
37.7
-1.4
3
48
47.7
Minor BPS
63.5
0.51
1.7
83.66
37.6

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161