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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7383350_7384260_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7383350 - 7384260
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ACTTTGTTATTT
Flanking Amino Acid:
QFVKRIGQLIKMTLCHVSDH
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.1
29.5
Major BPS
76.8
0.67
1
66
40.9
Major PPT
84.5
0.78
0.9
80.6
37
Minor 5ss
31.5
-2.1
3.4
38.4
40.9
Minor BPS
48.3
-0
2.2
69.06
42.8

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161