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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7391464_7391840_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7391464 - 7391840
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCCTCTCATTC
Flanking Amino Acid:
AGLLSESIKQVSYLASIVRY
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85.7
0.8
0.8
80.6
31.5
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
47.8
-0.1
1.8
59.33
40.3

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161