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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7392101_7393845_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7392101 - 7393845
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TCTTCCTTATTT
Flanking Amino Acid:
LALAMTMLGHSIEKFCAEGI
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
76.2
39.9
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82.5
0.73
1
79.9
37.7
Minor 5ss
39.9
-1.1
3.4
55
49.2
Minor BPS
75.3
0.87
1.5
87.57
38.6

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161