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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7396311_7397158_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7396311 - 7397158
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTCCATTATT
Flanking Amino Acid:
FVEGNANSSQVWFSWMVLNM
Intron Amino Acid Position:
1004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.6
0.53
1
67.9
42.5
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
61.9
0.45
1.9
83.55
36.9

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161