About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7399033_7399231_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7399033 - 7399231
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TTTTTGCTATTT
Flanking Amino Acid:
LYLHRPGPQYGLPVDGCIGR
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
86
0.81
0.7
85.1
29.7
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
46.2
-0.2
2.4
75.75
41.6

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161