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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7399460_7400759_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7399460 - 7400759
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
TSPELHKELVRLCNVFVLWL
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.4
34.2
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
31.9
-2.1
3.2
42.1
45
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161