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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_74004534_74008556_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74004534 - 74008556
Intron Length:
4023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CACCATTATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTTTCCACCATT
Flanking Amino Acid:
APLAQQAQRFRRFPPMTIDG
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
74.5
37.6
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
68.9
0.43
1
65.4
39.6
Minor 5ss
34
-1.8
2.9
42
44.5
Minor BPS
50.6
0.1
2.2
81.26
40.6

Associated Gene:

Gene:
ELAVL2
Ensembl Gene ID:
ENSAPLG00000010429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038270
74004203 - 74061545
57343