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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_74007801_74008556_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74007801 - 74008556
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTACTCAAAC
Flanking Amino Acid:
APLAQQAQRFRTKSACSLRE
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
74.5
37.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.2
0.68
1
79.3
38.2
Minor 5ss
34
-1.8
2.9
42
44.5
Minor BPS
57
0.2
1.8
70.97
39.3

Associated Gene:

Gene:
ELAVL2
Ensembl Gene ID:
ENSAPLG00000010429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028700
74004203 - 74052883
48681