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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_74008783_74011461_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74008783 - 74011461
Intron Length:
2679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCAACCTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTCCTTCAACC
Flanking Amino Acid:
TSRILVDQVTGVSRGVGFIR
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.7
0.42
1
62.3
38.5
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
63.6
0.4
1.6
72.01
39.2

Associated Gene:

Gene:
ELAVL2
Ensembl Gene ID:
ENSAPLG00000010429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033707
74004203 - 74091011
86809
ENSAPLT00000028700
74004203 - 74052883
48681
ENSAPLT00000047082
74004203 - 74091011
86809
ENSAPLT00000010861
74004203 - 74061545
57343
ENSAPLT00000038270
74004203 - 74061545
57343
ENSAPLT00000034852
74004203 - 74091011
86809