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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7408798_7408912_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7408798 - 7408912
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGATGCC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CTTTCCTTATCT
Flanking Amino Acid:
SVEILLSEEQVRETIEWLSS
Intron Amino Acid Position:
1667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
63.5
36.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
93.4
0.98
0.5
92.6
17.4
Minor 5ss
26.5
-2.7
3.3
35
41.6
Minor BPS
78.6
0.98
1.5
91.83
37.8

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161